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| 16.03.2007 | 19:30 | FC St. Pauli | - | SV Wilhelmshaven | 2:0 (0:0) | |
| 17.03.2007 | 14:00 | Holstein Kiel | - | Hertha BSC II | 1:0 (1:0) | |
| 14:00 | Rot-Weiß Erfurt | - | 1. FC Magdeburg | 2:2 (2:0) | ||
| 14:00 | Rot Weiss Ahlen | - | VfB Lübeck | 1:3 (0:2) | ||
| 14:00 | Bor. Mönchengladbach II | - | Werder Bremen II | 2:3 (1:1) | ||
| 14:00 | Fortuna Düsseldorf | - | Wuppertaler SV | 1:3 (0:0) | ||
| 14:00 | Kickers Emden | - | Bayer Leverkusen II | 3:1 (1:0) | ||
| 14:00 | Hamburger SV II | - | 1. FC Union Berlin | 0:0 (0:0) | ||
| 14:00 | VfL Osnabrück | - | Borussia Dortmund II | 1:1 (0:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfL Osnabrück | 24 | 12 | 6 | 6 | 40:28 | 12 | 42 |
| 2 |
|
Kickers Emden | 25 | 12 | 6 | 7 | 35:28 | 7 | 42 |
| 3 |
|
Hamburger SV II | 25 | 11 | 8 | 6 | 36:29 | 7 | 41 |
| 4 |
|
FC St. Pauli | 25 | 11 | 8 | 6 | 31:26 | 5 | 41 |
| 5 |
|
VfB Lübeck | 25 | 12 | 4 | 9 | 37:29 | 8 | 40 |
| 6 |
|
Wuppertaler SV | 25 | 11 | 7 | 7 | 37:32 | 5 | 40 |
| 7 |
|
Werder Bremen II | 25 | 11 | 4 | 10 | 42:36 | 6 | 37 |
| 8 |
|
Fortuna Düsseldorf | 24 | 9 | 10 | 5 | 36:30 | 6 | 37 |
| 9 |
|
Dynamo Dresden | 24 | 11 | 4 | 9 | 32:28 | 4 | 37 |
| 10 |
|
1. FC Union Berlin | 24 | 10 | 6 | 8 | 33:22 | 11 | 36 |
| 11 |
|
Rot Weiss Ahlen | 25 | 10 | 6 | 9 | 38:37 | 1 | 36 |
| 12 |
|
1. FC Magdeburg | 25 | 9 | 9 | 7 | 32:31 | 1 | 36 |
| 13 |
|
Rot-Weiß Erfurt | 24 | 9 | 8 | 7 | 27:28 | -1 | 35 |
| 14 |
|
Holstein Kiel | 25 | 7 | 8 | 10 | 28:35 | -7 | 29 |
| 15 |
|
SV Wilhelmshaven | 24 | 6 | 7 | 11 | 27:36 | -9 | 25 |
| 16 |
|
Hertha BSC II | 25 | 6 | 6 | 13 | 23:35 | -12 | 24 |
| 17 |
|
Bayer Leverkusen II | 24 | 5 | 7 | 12 | 22:34 | -12 | 22 |
| 18 |
|
Borussia Dortmund II | 25 | 6 | 4 | 15 | 23:40 | -17 | 22 |
| 19 |
|
Bor. Mönchengladbach II | 25 | 4 | 6 | 15 | 26:41 | -15 | 18 |
