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| 04.05.2013 | 10:15 | FK Ústí nad Labem | - | FC Fastav Zlín | 1:2 (1:0) | |
| 10:15 | Bohemians Praha | - | FK Pardubice | 0:4 (0:2) | ||
| 16:30 | FK Baník Most | - | Bohemians 1905 | 0:1 (0:0) | ||
| 17:00 | FK MAS Táborsko | - | SFC Opava | 5:3 (4:2) | ||
| 17:00 | FC Graffin Vlašim | - | FK Varnsdorf | 2:1 (0:1) | ||
| 17:00 | 1. HFK Olomouc | - | FK Baník Sokolov | 1:0 (1:0) | ||
| 05.05.2013 | 10:15 | Viktoria Žižkov | - | 1. SC Znojmo | 1:1 (1:0) | |
| 17:00 | FK Čáslav | - | MFK Karviná | 1:3 (0:2) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Bohemians 1905 | 26 | 14 | 8 | 4 | 40:19 | 21 | 50 |
| 2 |
|
1. SC Znojmo | 26 | 14 | 7 | 5 | 39:21 | 18 | 49 |
| 3 |
|
FC Fastav Zlín | 26 | 13 | 5 | 8 | 44:31 | 13 | 44 |
| 4 |
|
FK Baník Sokolov | 26 | 12 | 8 | 6 | 33:22 | 11 | 44 |
| 5 |
|
1. HFK Olomouc | 26 | 13 | 5 | 8 | 35:31 | 4 | 44 |
| 6 |
|
FK Pardubice | 26 | 13 | 3 | 10 | 42:26 | 16 | 42 |
| 7 |
|
FK Varnsdorf | 26 | 12 | 3 | 11 | 40:33 | 7 | 39 |
| 8 |
|
Viktoria Žižkov | 26 | 10 | 8 | 8 | 31:25 | 6 | 38 |
| 9 |
|
FK Ústí nad Labem | 26 | 10 | 6 | 10 | 29:35 | -6 | 36 |
| 10 |
|
MFK Karviná | 26 | 9 | 8 | 9 | 34:39 | -5 | 35 |
| 11 |
|
Bohemians Praha | 26 | 4 | 16 | 6 | 22:26 | -4 | 28 |
| 12 |
|
FK MAS Táborsko | 26 | 6 | 10 | 10 | 28:36 | -8 | 28 |
| 13 |
|
FC Graffin Vlašim | 26 | 7 | 6 | 13 | 33:51 | -18 | 27 |
| 14 |
|
FK Baník Most | 26 | 6 | 6 | 14 | 25:43 | -18 | 24 |
| 15 |
|
SFC Opava | 26 | 5 | 6 | 15 | 30:49 | -19 | 21 |
| 16 |
|
FK Čáslav | 26 | 4 | 7 | 15 | 18:36 | -18 | 19 |
| Aufstieg | |
| Abstieg |
