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| 11.05.2013 | 10:15 | FK Pardubice | - | FK Baník Sokolov | 2:0 (0:0) | |
| 10:30 | MFK Karviná | - | 1. HFK Olomouc | 7:1 (4:0) | ||
| 17:00 | FC Graffin Vlašim | - | FK MAS Táborsko | 0:2 (0:1) | ||
| 18:00 | SFC Opava | - | FK Čáslav | 2:3 (1:1) | ||
| 19:00 | FC Fastav Zlín | - | FK Baník Most | 1:1 (0:1) | ||
| 12.05.2013 | 17:00 | FK Varnsdorf | - | Viktoria Žižkov | 1:1 (1:1) | |
| 17:00 | Bohemians 1905 | - | FK Ústí nad Labem | 3:0 (1:0) | ||
| 17:00 | 1. SC Znojmo | - | Bohemians Praha | 2:1 (1:1) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Bohemians 1905 | 27 | 15 | 8 | 4 | 43:19 | 24 | 53 |
| 2 |
|
1. SC Znojmo | 27 | 15 | 7 | 5 | 41:22 | 19 | 52 |
| 3 |
|
FK Pardubice | 27 | 14 | 3 | 10 | 44:26 | 18 | 45 |
| 4 |
|
FC Fastav Zlín | 27 | 13 | 6 | 8 | 45:32 | 13 | 45 |
| 5 |
|
FK Baník Sokolov | 27 | 12 | 8 | 7 | 33:24 | 9 | 44 |
| 6 |
|
1. HFK Olomouc | 27 | 13 | 5 | 9 | 36:38 | -2 | 44 |
| 7 |
|
FK Varnsdorf | 27 | 12 | 4 | 11 | 41:34 | 7 | 40 |
| 8 |
|
Viktoria Žižkov | 27 | 10 | 9 | 8 | 32:26 | 6 | 39 |
| 9 |
|
MFK Karviná | 27 | 10 | 8 | 9 | 41:40 | 1 | 38 |
| 10 |
|
FK Ústí nad Labem | 27 | 10 | 6 | 11 | 29:38 | -9 | 36 |
| 11 |
|
FK MAS Táborsko | 27 | 7 | 10 | 10 | 30:36 | -6 | 31 |
| 12 |
|
Bohemians Praha | 27 | 4 | 16 | 7 | 23:28 | -5 | 28 |
| 13 |
|
FC Graffin Vlašim | 27 | 7 | 6 | 14 | 33:53 | -20 | 27 |
| 14 |
|
FK Baník Most | 27 | 6 | 7 | 14 | 26:44 | -18 | 25 |
| 15 |
|
FK Čáslav | 27 | 5 | 7 | 15 | 21:38 | -17 | 22 |
| 16 |
|
SFC Opava | 27 | 5 | 6 | 16 | 32:52 | -20 | 21 |
| Aufstieg | |
| Abstieg |
