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| 27.04.2013 | 10:15 | FK Pardubice | - | FK Čáslav | 2:0 (0:0) | |
| 10:15 | FK Baník Sokolov | - | Bohemians Praha | 1:1 (1:0) | ||
| 17:00 | 1. HFK Olomouc | - | FK Baník Most | 2:0 (1:0) | ||
| 18:00 | SFC Opava | - | FC Graffin Vlašim | 5:2 (3:0) | ||
| 19:00 | FC Fastav Zlín | - | Viktoria Žižkov | 1:1 (1:1) | ||
| 28.04.2013 | 17:00 | 1. SC Znojmo | - | FK Varnsdorf | 3:0 (2:0) | |
| 17:00 | Bohemians 1905 | - | FK MAS Táborsko | 2:2 (0:1) | ||
| 17:00 | MFK Karviná | - | FK Ústí nad Labem | 1:0 (0:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. SC Znojmo | 25 | 14 | 6 | 5 | 38:20 | 18 | 48 |
| 2 |
|
Bohemians 1905 | 25 | 13 | 8 | 4 | 39:19 | 20 | 47 |
| 3 |
|
FK Baník Sokolov | 25 | 12 | 8 | 5 | 33:21 | 12 | 44 |
| 4 |
|
FC Fastav Zlín | 25 | 12 | 5 | 8 | 42:30 | 12 | 41 |
| 5 |
|
1. HFK Olomouc | 25 | 12 | 5 | 8 | 34:31 | 3 | 41 |
| 6 |
|
FK Pardubice | 25 | 12 | 3 | 10 | 38:26 | 12 | 39 |
| 7 |
|
FK Varnsdorf | 25 | 12 | 3 | 10 | 39:31 | 8 | 39 |
| 8 |
|
Viktoria Žižkov | 25 | 10 | 7 | 8 | 30:24 | 6 | 37 |
| 9 |
|
FK Ústí nad Labem | 25 | 10 | 6 | 9 | 28:33 | -5 | 36 |
| 10 |
|
MFK Karviná | 25 | 8 | 8 | 9 | 31:38 | -7 | 32 |
| 11 |
|
Bohemians Praha | 25 | 4 | 16 | 5 | 22:22 | 0 | 28 |
| 12 |
|
FK MAS Táborsko | 25 | 5 | 10 | 10 | 23:33 | -10 | 25 |
| 13 |
|
FK Baník Most | 25 | 6 | 6 | 13 | 25:42 | -17 | 24 |
| 14 |
|
FC Graffin Vlašim | 25 | 6 | 6 | 13 | 31:50 | -19 | 24 |
| 15 |
|
SFC Opava | 25 | 5 | 6 | 14 | 27:44 | -17 | 21 |
| 16 |
|
FK Čáslav | 25 | 4 | 7 | 14 | 17:33 | -16 | 19 |
| Aufstieg | |
| Abstieg |
