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| 02.05.2009 | 17:00 | HNK Orašje | - | Slavija Sarajevo | 2:1 | |
| 17:00 | Široki Brijeg | - | FK Modriča | 2:1 | ||
| 17:00 | NK Travnik | - | Velež Mostar | 3:0 | ||
| 17:00 | Leotar Trebinje | - | NK Posušje | 3:1 | ||
| 18:30 | Sloboda Tuzla | - | Zvijezda Gradačac | 1:0 | ||
| 20:10 | Borac Banja Luka | - | Željezničar Sarajevo | 2:0 | ||
| 03.05.2009 | 19:00 | FK Sarajevo | - | FK Laktaši | 1:0 | |
| 19:00 | Zrinjski Mostar | - | Čelik Zenica | 1:0 |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Zrinjski Mostar | 27 | 17 | 3 | 7 | 46:32 | 14 | 54 |
| 2 |
|
Sloboda Tuzla | 27 | 14 | 5 | 8 | 29:23 | 6 | 47 |
| 3 |
|
FK Sarajevo | 27 | 13 | 7 | 7 | 38:26 | 12 | 46 |
| 4 |
|
Slavija Sarajevo | 27 | 13 | 6 | 8 | 31:25 | 6 | 45 |
| 5 |
|
Borac Banja Luka | 27 | 13 | 3 | 11 | 39:24 | 15 | 42 |
| 6 |
|
Široki Brijeg | 27 | 12 | 3 | 12 | 41:34 | 7 | 39 |
| 7 |
|
Čelik Zenica | 27 | 11 | 5 | 11 | 28:29 | -1 | 38 |
| 8 |
|
Zvijezda Gradačac | 27 | 9 | 10 | 8 | 35:31 | 4 | 37 |
| 9 |
|
FK Laktaši | 27 | 10 | 6 | 11 | 38:33 | 5 | 36 |
| 10 |
|
Željezničar Sarajevo | 27 | 11 | 3 | 13 | 25:31 | -6 | 36 |
| 11 |
|
Leotar Trebinje | 27 | 11 | 3 | 13 | 30:40 | -10 | 36 |
| 12 |
|
NK Travnik | 27 | 10 | 4 | 13 | 31:45 | -14 | 34 |
| 13 |
|
FK Modriča | 27 | 9 | 6 | 12 | 30:34 | -4 | 33 |
| 14 |
|
HNK Orašje | 27 | 8 | 7 | 12 | 29:37 | -8 | 31 |
| 15 |
|
Velež Mostar | 27 | 9 | 3 | 15 | 32:39 | -7 | 30 |
| 16 |
|
NK Posušje | 27 | 5 | 8 | 14 | 30:49 | -19 | 23 |
| Champions League Quali. | |
| Europa League | |
| Abstieg |
