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| 04.05.2012 | 18:00 | Vysočina Jihlava | - | FK Baník Most | 3:0 (1:0) | |
| 05.05.2012 | 10:15 | Bohemians Praha | - | SFC Opava | 1:2 (0:1) | |
| 10:15 | FK Baník Sokolov | - | MFK Karviná | 2:0 (0:0) | ||
| 10:15 | FK Ústí nad Labem | - | 1. SC Znojmo | 1:0 (1:0) | ||
| 10:15 | FK Fotbal Třinec | - | FC Graffin Vlašim | 1:2 (0:1) | ||
| 17:00 | FK MAS Táborsko | - | FK Varnsdorf | 1:1 (1:0) | ||
| 06.05.2012 | 17:00 | Zbrojovka Brno | - | AC Sparta Praha B | 1:1 (0:0) | |
| 17:00 | FK Čáslav | - | Tescoma Zlín | 3:0 (0:0) |
| # | Mannschaft | Sp. | S. | U. | N. | Tore | Dif. | Pk. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FK Ústí nad Labem | 26 | 17 | 3 | 6 | 47:30 | 17 | 54 |
| 2 |
|
Vysočina Jihlava | 26 | 14 | 6 | 6 | 39:26 | 13 | 48 |
| 3 |
|
FK Baník Sokolov | 26 | 13 | 6 | 7 | 37:27 | 10 | 45 |
| 4 |
|
Bohemians Praha | 26 | 13 | 5 | 8 | 41:27 | 14 | 44 |
| 5 |
|
Zbrojovka Brno | 26 | 11 | 9 | 6 | 34:27 | 7 | 42 |
| 6 |
|
MFK Karviná | 26 | 12 | 4 | 10 | 35:33 | 2 | 40 |
| 7 |
|
FK Varnsdorf | 26 | 9 | 10 | 7 | 30:32 | -2 | 37 |
| 8 |
|
SFC Opava | 26 | 9 | 7 | 10 | 35:33 | 2 | 34 |
| 9 |
|
Tescoma Zlín | 26 | 9 | 6 | 11 | 25:30 | -5 | 33 |
| 10 |
|
FK MAS Táborsko | 26 | 10 | 3 | 13 | 34:39 | -5 | 33 |
| 11 |
|
FK Čáslav | 26 | 8 | 8 | 10 | 27:32 | -5 | 32 |
| 12 |
|
FC Graffin Vlašim | 26 | 8 | 7 | 11 | 33:35 | -2 | 31 |
| 13 |
|
1. SC Znojmo | 26 | 8 | 7 | 11 | 26:32 | -6 | 31 |
| 14 |
|
FK Baník Most | 26 | 8 | 5 | 13 | 25:42 | -17 | 29 |
| 15 |
|
FK Fotbal Třinec | 26 | 6 | 8 | 12 | 27:35 | -8 | 26 |
| 16 |
|
AC Sparta Praha B | 26 | 5 | 2 | 19 | 30:45 | -15 | 17 |
| Aufstieg | |
| Abstieg |
